MTAlPos

Both MTPairwiseSequenceAlignment (3.11) and MTPairwiseStrxAlignment (3.10) keep a list of aligned positions (instances of class MTAlPos) internally. To analyse the alignments one may access these objects directly.

* access

-(NSString*)description returns textual representation

-(BOOL)isGapped returns YES if this pair contains a gapped position

-(double)distance returns the distance between the paired residues

-(MTResidue*)res1 returns the first residue (3.6)

-(MTResidue*)res2 returns the second residue (3.6)

moltalk@moltalk.org version of this document: V3.0

* access
`-(NSString*)description`	returns textual representation
`-(BOOL)isGapped`	returns YES if this pair contains a gapped position
`-(double)distance`	returns the distance between the paired residues
`-(MTResidue*)res1`	returns the first residue (3.6)
`-(MTResidue*)res2`	returns the second residue (3.6)