+(MTPairwiseStrxAlignment*)alignmentBetweenChain:(MTChain*)p_chain1 andChain:(MTChain*)p_chain2 - [MTPairwiseStrxAlignment]
-(NSArray*)alignmentPositions - [MTPairwiseStrxAlignment]
-(double)calculateRMSD - [MTPairwiseStrxAlignment]
-(MTChain*)chain1 - [MTPairwiseStrxAlignment]
-(MTChain*)chain2 - [MTPairwiseStrxAlignment]
-(int)countPairs - [MTPairwiseStrxAlignment]
-(int)countPairsMaxDistance:(double)dist - [MTPairwiseStrxAlignment]
-(int)countUngappedPairs - [MTPairwiseStrxAlignment]
-(void)deriveStructuralAlignment - [MTPairwiseStrxAlignment]
-(NSString*)description - [MTPairwiseStrxAlignment]
-(void)fromStreamAsTCoffee:(MTStream*)stream - [MTPairwiseStrxAlignment]
-(int)gep - [MTPairwiseStrxAlignment]
-(MTMatrix53*)getTransformation - [MTPairwiseStrxAlignment]
-(void)globalSequenceInducedStructuralAlignment - [MTPairwiseStrxAlignment]
-(int)gop - [MTPairwiseStrxAlignment]
-(void)localSequenceInducedStructuralAlignment - [MTPairwiseStrxAlignment]
-(void)optimize - [MTPairwiseStrxAlignment]
-(void)setGep:(int)p_gep - [MTPairwiseStrxAlignment]
-(void)setGop:(int)p_gop - [MTPairwiseStrxAlignment]
-(void)toStreamAsTCoffee:(MTStream*)stream name1:(NSString*)name1 name2:(NSString*)name2 - [MTPairwiseStrxAlignment]
generated 07-Jun-2006 by ObjcDoc 3.0.0