Class MTAlPos

Inherits from:

NSObject

Declared in:

../libmoltalk/MTAlPos.oh

Class Hierarchy

    NSObject
      |
      +---MTAlPos

Last modified:

16-May-2006 (../libmoltalk/MTAlPos.oh)

Instance Variables

private MTResidue *res1

private MTResidue *res2

private double distance

private BOOL significant

Method Index

• commonly used methods
  

  -(NSString*)description

• readonly access
  

  -(double)distance

  -(BOOL)isGapped

  -(MTResidue*)res1

  -(MTResidue*)res2

• flag it to be (not) significant
  

  -(id)designify

  -(id)signify

• setters
  

  -(void)distance:(double)dist

  -(void)res1:(MTResidue*)res1

  -(void)res2:(MTResidue*)res2

• creation
  

  +(MTAlPos*)alposWithRes1:(MTResidue*)r1 res2:(MTResidue*)r2

Methods

+(MTAlPos*)alposWithRes1:(MTResidue*)r1 res2:(MTResidue*)r2

create alPos with pair of residues

-(NSString*)description

-(id)designify

remove flag

-(double)distance

return distance between the two residues, or -1.0 for a gapped position

-(void)distance:(double)dist

-(BOOL)isGapped

true if one of the residues is missing, indicating a gap

-(MTResidue*)res1

return reference to residue

-(void)res1:(MTResidue*)p_res1

setters

-(MTResidue*)res2

return reference to residue

-(void)res2:(MTResidue*)p_res2

-(id)signify

set flag